Glyma03g30610 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g30610

Feature Type:	gene_model
Chromosome:	Gm03
Start:	38511117
stop:	38513966
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g30610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G48070	AT	Annotation by Michelle Graham. TAIR10: resistance to phytophthora 1 \| chr2:19662863-19663773 FORWARD LENGTH=197	SoyBase	E_val: 2.00E-77	ISS
GO:0002229	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to oomycetes	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0010729	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JNQ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNQ6_SOYBN	SoyBase	E_val: 5.00E-170	ISS
UniRef100_Q9ZU82	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZU82_ARATH	SoyBase	E_val: 1.00E-74	ISS

Expression Patterns of Glyma03g30610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g30610

Paralog	Evidence	Comments
Glyma19g33510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g30610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g149600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g30610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g30610

Limit To All Plant Sequences

>Glyma03g30610.3   sequence type=transcript   gene model=Glyma03g30610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGCACGAGAGGAAAAAAAAGAAAGAGAATTTGGTATGTAAAAAGTAATGTGACGTCACTGCTTTGCTTCGTTCCAATTCCACCTCACATTCCTTATCTTTCTTCTTCTTCTTCTTCTCAACCGTCGTCGATTCTCAGTTTCCGATTGCAGAACTTGATTTCAGAATCCAAAAAAATGAACACGTTAATCTCACCGCCTTCTACAAACCGTTACCTTTGTGGGGTCCCTTACTCTTTCCTCTCTCCGCTTCGACACAACAACAACACCAACCTTAACCTTCCGAGGTTCCATTCCACAGTTGCTACCAACTTCTTGTCACACTCTCCGGTTCGGGCCACGCTCTCCGCACGTGCCACTTCCGATGAAGTAGACACGCAAACGGTGGTTGAGGAACTTTCAGAGGAGAATAAAGTGGAAGAGAACACCAACGAGGACAACACAAACACGTCCACTTTTTCTGCTCCAATTGACAAAGAACTTAAAAAGGTTGCTCAGAAGACTGCTGCTACCTTTGCACCAAGGGCTTCCACGGCTACAAAAAACCCTGCAGTGCCTGGAACTGTTTTGTACAGTGTTTTTGAGGTTCAAGGGTATGTTTCAATGTTGTTGGGAGGAGCTTTGTCTTTTAATCTCATATTCCCTTCTGATGAACCTGACATTTGGAGATTAATGGGAATGTGGTCCATTTGGATGTTCACAATTCCTTCATTACGAGCTCGAGATTGCTCAAAGAATGAGAAAGAAGCTCTCAACTATCTTTTTCTCCTCGTCCCATTGATCAATGTTATAATCCCATTCTTTTGGAAGTCCTTTGCTGTTGTTTGGTCCGCAGATGTAGTAGCCTTCTTGGGAATGTACGCATGGAAGAGAACGGATTAAGGAACCCAAATTTGGTTAGTAAAAGTTATCAATGCTTGTTGGCTTTGTCTTTCTCATGGATCTCAATTTTGTATAACACGCAGCAATGAGATGTGACATTCCTTGTAGCACTTCATGGCCCCCAACTCATGGATGAGTGATTTCTGTGTTAAAAGTTTGAGTAGCCTTTGCATCTACTAGGGGAGCAAGATACCATGTTGCATTCGTTAAACATCAAATGAAGAGAATGTTATAGGTTCTTTAAAAAGTTTAGCATGTTGTATTATTGCCGTGTCTCACGTTGCAGGAAATTTGAAATTCCCGAATGTAATCAAGAACCTCCAAAAGATGAAATGTGAAGTCATGATACATATATTTTTGTACCACTGAGATTTTCGATGGCTGTAACGTATTTTCTTAACTGGACGAAAATTAAAATTTAGAAGACAGATGTATCCTGGTTTGTATCTGATGAATGAAGAGTAAGGGTTGTTATT

Coding sequences of Glyma03g30610

Limit To All Plant Sequences

>Glyma03g30610.1   sequence type=CDS   gene model=Glyma03g30610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACACGTTAATCTCACCGCCTTCTACAAACCGTTACCTTTGTGGGGTCCCTTACTCTTTCCTCTCTCCGCTTCGACACAACAACAACACCAACCTTAACCTTCCGAGGTTCCATTCCACAGTTGCTACCAACTTCTTGTCACACTCTCCGGTTCGGGCCACGCTCTCCGCACGTGCCACTTCCGATGAAGTAGACACGCAAACGGTGGTTGAGGAACTTTCAGAGGAGAATAAAGTGGAAGAGAACACCAACGAGGACAACACAAACACGTCCACTTTTTCTGCTCCAATTGACAAAGAACTTAAAAAGGTTGCTCAGAAGACTGCTGCTACCTTTGCACCAAGGGCTTCCACGGCTACAAAAAACCCTGCAGTGCCTGGAACTGTTTTGTACAGTGTTTTTGAGGTTCAAGGGTATGTTTCAATGTTGTTGGGAGGAGCTTTGTCTTTTAATCTCATATTCCCTTCTGATGAACCTGACATTTGGAGATTAATGGGAATGTGGTCCATTTGGATGTTCACAATTCCTTCATTACGAGCTCGAGATTGCTCAAAGAATGAGAAAGAAGCTCTCAACTATCTTTTTCTCCTCGTCCCATTGATCAATGTTATAATCCCATTCTTTTGGAAGTCCTTTGCTGTTGTTTGGTCCGCAGATGTAGTAGCCTTCTTGGGAATGTACGCATGGAAGTTTGGATGGCTTCAGAGAACGGATTAA

>Glyma03g30610.3   sequence type=CDS   gene model=Glyma03g30610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGCACGAGAGGAAAAAAAAGAAAGAGAATTTGGTATGTAAAAAGTAATGTGACGTCACTGCTTTGCTTCGTTCCAATTCCACCTCACATTCCTTATCTTTCTTCTTCTTCTTCTTCTCAACCGTCGTCGATTCTCAGTTTCCGATTGCAGAACTTGATTTCAGAATCCAAAAAAATGAACACGTTAATCTCACCGCCTTCTACAAACCGTTACCTTTGTGGGGTCCCTTACTCTTTCCTCTCTCCGCTTCGACACAACAACAACACCAACCTTAACCTTCCGAGGTTCCATTCCACAGTTGCTACCAACTTCTTGTCACACTCTCCGGTTCGGGCCACGCTCTCCGCACGTGCCACTTCCGATGAAGTAGACACGCAAACGGTGGTTGAGGAACTTTCAGAGGAGAATAAAGTGGAAGAGAACACCAACGAGGACAACACAAACACGTCCACTTTTTCTGCTCCAATTGACAAAGAACTTAAAAAGGTTGCTCAGAAGACTGCTGCTACCTTTGCACCAAGGGCTTCCACGGCTACAAAAAACCCTGCAGTGCCTGGAACTGTTTTGTACAGTGTTTTTGAGGTTCAAGGGTATGTTTCAATGTTGTTGGGAGGAGCTTTGTCTTTTAATCTCATATTCCCTTCTGATGAACCTGACATTTGGAGATTAATGGGAATGTGGTCCATTTGGATGTTCACAATTCCTTCATTACGAGCTCGAGATTGCTCAAAGAATGAGAAAGAAGCTCTCAACTATCTTTTTCTCCTCGTCCCATTGATCAATGTTATAATCCCATTCTTTTGGAAGTCCTTTGCTGTTGTTTGGTCCGCAGATGTAGTAGCCTTCTTGGGAATGTACGCATGGAAGAGAACGGATTAA

Predicted protein sequences of Glyma03g30610

Limit To All Plant Sequences

>Glyma03g30610.1   sequence type=predicted peptide   gene model=Glyma03g30610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTLISPPSTNRYLCGVPYSFLSPLRHNNNTNLNLPRFHSTVATNFLSHSPVRATLSARATSDEVDTQTVVEELSEENKVEENTNEDNTNTSTFSAPIDKELKKVAQKTAATFAPRASTATKNPAVPGTVLYSVFEVQGYVSMLLGGALSFNLIFPSDEPDIWRLMGMWSIWMFTIPSLRARDCSKNEKEALNYLFLLVPLINVIIPFFWKSFAVVWSADVVAFLGMYAWKFGWLQRTD*

>Glyma03g30610.3   sequence type=predicted peptide   gene model=Glyma03g30610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECTRGKKRKRIWYVKSNVTSLLCFVPIPPHIPYLSSSSSSQPSSILSFRLQNLISESKKMNTLISPPSTNRYLCGVPYSFLSPLRHNNNTNLNLPRFHSTVATNFLSHSPVRATLSARATSDEVDTQTVVEELSEENKVEENTNEDNTNTSTFSAPIDKELKKVAQKTAATFAPRASTATKNPAVPGTVLYSVFEVQGYVSMLLGGALSFNLIFPSDEPDIWRLMGMWSIWMFTIPSLRARDCSKNEKEALNYLFLLVPLINVIIPFFWKSFAVVWSADVVAFLGMYAWKRTD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain